[PDF] Medical SAM 2: Segment medical images as video via Segment Anything Model 2 | Semantic Scholar (2024)

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  • Corpus ID: 271693433
@inproceedings{Zhu2024MedicalS2, title={Medical SAM 2: Segment medical images as video via Segment Anything Model 2}, author={Jiayuan Zhu and Yunli Qi and Junde Wu}, year={2024}, url={https://api.semanticscholar.org/CorpusID:271693433}}
  • Jiayuan Zhu, Yunli Qi, Junde Wu
  • Published 1 August 2024
  • Medicine, Computer Science

An advanced segmentation model that utilizes the SAM 2 framework to address both 2D and 3D medical image segmentation tasks, and unlocks new One-prompt Segmentation capability by adopting the philosophy of taking medical images as videos.

2 Citations

Background Citations

1

Methods Citations

1

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Segment Anything in Medical Images and Videos: Benchmark and Deployment
    Jun MaSumin Kim Bo Wang

    Computer Science, Medicine

  • 2024

A transfer learning pipeline is developed and it is demonstrated SAM2 can be quickly adapted to medical domain by fine-tuning and implemented as a 3D slicer plugin and Gradio API for efficient 3D image and video segmentation.

Interactive 3D Medical Image Segmentation with SAM 2
    Chuyun ShenWenhao LiYuhang ShiXiangfeng Wang

    Medicine, Computer Science

  • 2024

This paper explores the zero-shot capabilities of SAM 2, the next-generation Meta SAM model trained on videos, for 3D medical image segmentation and proposes a practical pipeline for using SAM 2 in 3D medical image segmentation and presents key findings highlighting its efficiency and potential for further optimization.

52 References

One-Prompt to Segment All Medical Images
    Junde WuJiayuan ZhuYueming JinMin Xu

    Medicine, Computer Science

  • 2023

A new paradigm toward the universal medical image segmentation, termed 'One-Prompt Segmentation,' which combines the strengths of one-shot and interactive methods and can adeptly handle the unseen task in a single forward pass.

SAM 2: Segment Anything in Images and Videos
    Nikhila RaviValentin Gabeur Christoph Feichtenhofer

    Computer Science

  • 2024

A data engine is built, which improves model and data via user interaction, to collect the largest video segmentation dataset to date, and a simple transformer architecture with streaming memory for real-time video processing is presented.

Fully Automatic Segmentation of Gross Target Volume and Organs-at-Risk for Radiotherapy Planning of Nasopharyngeal Carcinoma
    M. AstarakiSimone BendazzoliI. Toma-Dasu

    Medicine, Engineering

    ArXiv

  • 2023

A fully-automatic framework is proposed and two models for segmentation of 45 Organs at Risk (OARs) and two Gross Tumor Volumes (GTVs) are developed and took second place for each of the tasks in the validation phase of the SegRap 2023 challenge.

SAM-Med2D
    Junlong ChengJin Ye Y. Qiao

    Computer Science, Medicine

  • 2023

The most comprehensive studies on applying SAM to medical 2D images and fine-tune the encoder and decoder of the original SAM to obtain a well-performed SAM-Med2D, leading to the most comprehensive fine-tuning strategies to date.

The KiTS21 Challenge: Automatic segmentation of kidneys, renal tumors, and renal cysts in corticomedullary-phase CT
    N. HellerFabian Isensee C. Weight

    Medicine, Computer Science

    ArXiv

  • 2023

Overall KiTS21 facilitated a significant advancement in the state of the art in kidney tumor segmentation, and provides useful insights that are applicable to the field of semantic segmentation as a whole.

A Tumour and Liver Automatic Segmentation (ATLAS) Dataset on Contrast-Enhanced Magnetic Resonance Imaging for Hepatocellular Carcinoma
    Félix QuintonR. Popoff J. Alberini

    Medicine, Engineering

    Data

  • 2023

The ATLAS dataset is the first public dataset providing CE-MRI of HCC with annotations and should greatly facilitate the development of automated tools designed to optimise the delineation process, which is essential for treatment planning in liver cancer patients.

  • 14
  • PDF
Customized Segment Anything Model for Medical Image Segmentation
    Kaiwen ZhangDong Liu

    Medicine, Computer Science

    ArXiv

  • 2023

The proposed SAMed is built upon the large-scale image segmentation model, Segment Anything Model (SAM), to explore the new research paradigm of customizing large- scale models for medical images segmentation.

Medical SAM Adapter: Adapting Segment Anything Model for Medical Image Segmentation
    Junde WuRao Fu T. Arbel

    Medicine, Computer Science

    ArXiv

  • 2023

This paper proposes the Medical SAM Adapter (Med-SA), which incorporates domain-specific medical knowledge into the segmentation model using a light yet effective adaptation technique, and outperforms several state-of-the-art medical image segmentation methods, while updating only 2\% of the parameters.

SegGPT: Segmenting Everything In Context
    Xinlong WangXiaosong ZhangYue CaoWen WangChunhua ShenTiejun Huang

    Computer Science

    ArXiv

  • 2023

SegGPT is presented, a generalist model for segmenting everything in context that accommodates different kinds of segmentation data by transforming them into the same format of images and shows strong capabilities in segmenting in-domain and out-of-domain targets.

Segment Anything
    A. KirillovEric Mintun Ross B. Girshick

    Computer Science

    2023 IEEE/CVF International Conference on…

  • 2023

The Segment Anything Model (SAM) is introduced: a new task, model, and dataset for image segmentation, and its zero-shot performance is impressive – often competitive with or even superior to prior fully supervised results.

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    [PDF] Medical SAM 2: Segment medical images as video via Segment Anything Model 2 | Semantic Scholar (2024)

    FAQs

    Is segment anything model sam in medical image segmentation tasks accurate? ›

    SAM's accuracy for zero-shot medical image segmentation is moderate on average and varies significantly across different datasets and different images within a dataset.

    How do you segment medical images? ›

    How does medical image segmentation work? When working with CT, MRI, and other types of scans, segmentation generally works by taking information from the background image data and using it to generate a mask. Depending on the task, users may work on their scans in 2D or 3D.

    What is medical image classification segmentation? ›

    Medical image segmentation has automatic or semiautomatic detection of the two-dimensional (2D), or three-dimensional (3D), image. Image segmentation is the procedure of dividing a digital image into a multiple set of pixels.

    What are the benefits of medical image segmentation? ›

    Medical image segmentation is a critical component in clinical practice, facilitating accurate diagnosis, treatment planning, and disease monitoring. However, existing methods, often tailored to specific modalities or disease types, lack generalizability across the diverse spectrum of medical image segmentation tasks.

    Which model is best for image segmentation? ›

    Threshold-based segmentation, graph-based segmentation, morphological-based segmentation, edge-based segmentation, clustering-based segmentation, Bayesian-based segmentation, and neural network-based segmentation are some of the best image segmentation models.

    Is segmentation better than object detection? ›

    Segmentation vs Detection: When to Choose Each

    Both approaches have their strengths and specific use cases, making it important to understand when to choose each one. Segmentation is the preferred choice when the task requires a comprehensive understanding of object boundaries and extracting fine-grained information.

    Which model is best for medical image segmentation? ›

    Deep learning models have demonstrated great promise in the field of medical image segmentation due to their ability to learn intricate imaging features. However, existing methods are often tailored for specific modalities or targets, which constrains their ability to effectively generalize across different tasks.

    What is Dicom segmentation? ›

    The Segmentation IOD specifies a multi-frame image representing a classification of pixels in one or more referenced images. Segmentations are either binary or fractional.

    What is an example of image segmentation? ›

    For example, a semantic segmentation model trained to identify certain classes on a city street would yield segmentation masks indicating the boundaries and contours for each relevant class of thing (like vehicles or light poles) and stuff (like roads and sidewalks), but not make any distinction between (or count the ...

    How does image segmentation work? ›

    How Image Segmentation Works. Image segmentation involves converting an image into a collection of regions of pixels that are represented by a mask or a labeled image.

    What is image and video segmentation? ›

    It involves partitioning a digital image into multiple segments (regions or objects) to simplify and analyze an image by separating it into meaningful components, Which makes the image processing more efficient by focusing on specific regions of interest.

    What is the difference between image classification and image segmentation? ›

    Segmentation provides fine-grained information about object boundaries and regions, while detection focuses on identifying specific objects and their locations. Classification assigns labels to images or regions, providing a holistic understanding of content.

    What are the advantages of image segmentation? ›

    Advantages of image segmentation include easy data storing, faster processing, and a multiple copy system. Disadvantages include the need for extreme precision and error-prone results. The paper discusses the advantages and disadvantages of image segmentation techniques in machine vision.

    Why is segmentation important in healthcare? ›

    As a healthcare organization, it's crucial to segment your patient populations as it will help you identify high-risk, high-cost patients, understand the complex care needs of various patient groups, and tailor care delivery or engagement efforts based on those specific needs.

    What are the segments of the medical imaging market? ›

    Radiology Market: Segmentation

    The global radiology market is segmented based on services, type, end-user, and region. Based on services, the global market is segmented into X-rays, fusion imaging, nuclear medicine, ultrasound, positron emission tomography (PET), computed tomography, and magnetic imaging (MRI).

    How is image segmentation accuracy measured? ›

    It can be assessed qualitatively through visual interpretation or quantitatively by comparing the segmentation result with a reference dataset and measuring the overlapping area or specific characteristics of the segments.

    What is the best model for semantic segmentation? ›

    Some popular deep learning models for semantic segmentation include Fully Convolutional Network (FCN), U-Net, DeepLab, and PSPNet. These models leverage the power of convolutional neural networks (CNNs) to extract features and classify pixels in complex images accurately.

    What is the segmentation model in healthcare? ›

    Segmentation aims to categorise the population according to health status, health care needs and priorities. This approach recognises that groups of people share characteristics that influence the way they interact with health and care services.

    What are the three types of segmentation in image processing? ›

    Broadly speaking, image segmentation is used for three types of tasks: semantic segmentation, instance segmentation and panoptic segmentation. The difference between each type of image segmentation task lies in how they treat semantic classes: the specific categories a given pixel might be determined to belong to.

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